Gene Family Search Results

Glycosyltransferase family 2 Populus genes with significant expression differentials

Class

Gene

Protein name

Sig. tests

Genbank ID

UniProt ID

Amino acid composition table

GT2

POPTR_0002s25970 (EnsemblPlants link)

Cellulose synthase (Fragment)

AFR39265.1(NCBI query)

J9RJZ1(UniProtKB link)

Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

Normalized RNA-seq library counts for POPTR_0002s25970

Cellulose synthase (Fragment)

WT-C
n =	3
Minimum	7.91
Maximum	18.97
Median	13.76
Mean	13.55
Variance	30.62
Std. Dev.	5.53
Quartiles
0.25	7.91
0.50	13.76
0.75	18.97

WT-T
n =	3
Minimum	6.59
Maximum	17.57
Median	13.03
Mean	12.40
Variance	30.44
Std. Dev.	5.52
Quartiles
0.25	6.59
0.50	13.03
0.75	17.57

1-C
n =	3
Minimum	10.11
Maximum	22.14
Median	18.89
Mean	17.05
Variance	38.73
Std. Dev.	6.22
Quartiles
0.25	10.11
0.50	18.89
0.75	22.14

1-T
n =	3
Minimum	7.59
Maximum	23.52
Median	14.97
Mean	15.36
Variance	63.56
Std. Dev.	7.97
Quartiles
0.25	7.59
0.50	14.97
0.75	23.52

165-C
n =	3
Minimum	18.64
Maximum	51.92
Median	33.45
Mean	34.67
Variance	278.01
Std. Dev.	16.67
Quartiles
0.25	18.64
0.50	33.45
0.75	51.92

165-T
n =	3
Minimum	35.49
Maximum	79.54
Median	65.11
Mean	60.05
Variance	504.33
Std. Dev.	22.46
Quartiles
0.25	35.49
0.50	65.11
0.75	79.54

167-C
n =	3
Minimum	36.70
Maximum	72.55
Median	51.05
Mean	53.43
Variance	325.57
Std. Dev.	18.04
Quartiles
0.25	36.70
0.50	51.05
0.75	72.55

167-T
n =	3
Minimum	20.80
Maximum	39.62
Median	26.92
Mean	29.11
Variance	92.16
Std. Dev.	9.60
Quartiles
0.25	20.80
0.50	26.92
0.75	39.62

Class

Gene

Protein name

Sig. tests

Genbank ID

UniProt ID

Amino acid composition table

GT2

POPTR_0004s05830 (EnsemblPlants link)

Cellulose synthase (Fragment)

AFR38455.1(NCBI query)

J9RAH2(UniProtKB link)

Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

Normalized RNA-seq library counts for POPTR_0004s05830

Cellulose synthase (Fragment)

WT-C
n =	3
Minimum	2.66
Maximum	6.16
Median	4.23
Mean	4.35
Variance	3.07
Std. Dev.	1.75
Quartiles
0.25	2.66
0.50	4.23
0.75	6.16

WT-T
n =	3
Minimum	2.08
Maximum	6.02
Median	4.44
Mean	4.18
Variance	3.93
Std. Dev.	1.98
Quartiles
0.25	2.08
0.50	4.44
0.75	6.02

1-C
n =	3
Minimum	2.74
Maximum	9.19
Median	5.93
Mean	5.95
Variance	10.40
Std. Dev.	3.23
Quartiles
0.25	2.74
0.50	5.93
0.75	9.19

1-T
n =	3
Minimum	3.60
Maximum	8.63
Median	5.30
Mean	5.84
Variance	6.55
Std. Dev.	2.56
Quartiles
0.25	3.60
0.50	5.30
0.75	8.63

165-C
n =	3
Minimum	6.11
Maximum	18.51
Median	11.89
Mean	12.17
Variance	38.50
Std. Dev.	6.20
Quartiles
0.25	6.11
0.50	11.89
0.75	18.51

165-T
n =	3
Minimum	5.52
Maximum	30.91
Median	24.50
Mean	20.31
Variance	174.33
Std. Dev.	13.20
Quartiles
0.25	5.52
0.50	24.50
0.75	30.91

167-C
n =	3
Minimum	11.93
Maximum	28.54
Median	19.20
Mean	19.89
Variance	69.33
Std. Dev.	8.33
Quartiles
0.25	11.93
0.50	19.20
0.75	28.54

167-T
n =	3
Minimum	8.05
Maximum	14.93
Median	9.31
Mean	10.76
Variance	13.42
Std. Dev.	3.66
Quartiles
0.25	8.05
0.50	9.31
0.75	14.93

Class

Gene

Protein name

Sig. tests

Genbank ID

UniProt ID

Amino acid composition table

GT2

POPTR_0006s19580 (EnsemblPlants link)

Cellulose synthase (Fragment)

AFR39055.1(NCBI query)

J9R957(UniProtKB link)

Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

Normalized RNA-seq library counts for POPTR_0006s19580

Cellulose synthase (Fragment)

WT-C
n =	3
Minimum	2.75
Maximum	5.97
Median	4.30
Mean	4.34
Variance	2.59
Std. Dev.	1.61
Quartiles
0.25	2.75
0.50	4.30
0.75	5.97

WT-T
n =	3
Minimum	2.81
Maximum	6.52
Median	3.88
Mean	4.40
Variance	3.65
Std. Dev.	1.91
Quartiles
0.25	2.81
0.50	3.88
0.75	6.52

1-C
n =	3
Minimum	4.59
Maximum	12.91
Median	5.16
Mean	7.55
Variance	21.60
Std. Dev.	4.65
Quartiles
0.25	4.59
0.50	5.16
0.75	12.91

1-T
n =	3
Minimum	3.82
Maximum	8.80
Median	6.28
Mean	6.30
Variance	6.20
Std. Dev.	2.49
Quartiles
0.25	3.82
0.50	6.28
0.75	8.80

165-C
n =	3
Minimum	12.08
Maximum	20.53
Median	19.80
Mean	17.47
Variance	21.92
Std. Dev.	4.68
Quartiles
0.25	12.08
0.50	19.80
0.75	20.53

165-T
n =	3
Minimum	10.50
Maximum	28.52
Median	26.77
Mean	21.93
Variance	98.75
Std. Dev.	9.94
Quartiles
0.25	10.50
0.50	26.77
0.75	28.52

167-C
n =	3
Minimum	12.64
Maximum	27.96
Median	19.82
Mean	20.14
Variance	58.75
Std. Dev.	7.67
Quartiles
0.25	12.64
0.50	19.82
0.75	27.96

167-T
n =	3
Minimum	9.77
Maximum	14.71
Median	11.51
Mean	12.00
Variance	6.28
Std. Dev.	2.51
Quartiles
0.25	9.77
0.50	11.51
0.75	14.71

Class

Gene

Protein name

Sig. tests

Genbank ID

UniProt ID

Amino acid composition table

GT2

POPTR_0018s11290 (EnsemblPlants link)

Cellulose synthase (Fragment)

AFR38796.1(NCBI query)

J9RI29(UniProtKB link)

Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

Normalized RNA-seq library counts for POPTR_0018s11290

Cellulose synthase (Fragment)

WT-C
n =	3
Minimum	3.06
Maximum	10.58
Median	8.19
Mean	7.28
Variance	14.76
Std. Dev.	3.84
Quartiles
0.25	3.06
0.50	8.19
0.75	10.58

WT-T
n =	3
Minimum	3.33
Maximum	10.45
Median	8.66
Mean	7.48
Variance	13.72
Std. Dev.	3.70
Quartiles
0.25	3.33
0.50	8.66
0.75	10.45

1-C
n =	3
Minimum	3.47
Maximum	14.12
Median	9.40
Mean	9.00
Variance	28.48
Std. Dev.	5.34
Quartiles
0.25	3.47
0.50	9.40
0.75	14.12

1-T
n =	3
Minimum	5.45
Maximum	11.03
Median	9.67
Mean	8.72
Variance	8.47
Std. Dev.	2.91
Quartiles
0.25	5.45
0.50	9.67
0.75	11.03

165-C
n =	3
Minimum	15.21
Maximum	27.29
Median	27.10
Mean	23.20
Variance	47.89
Std. Dev.	6.92
Quartiles
0.25	15.21
0.50	27.10
0.75	27.29

165-T
n =	3
Minimum	11.62
Maximum	37.01
Median	34.71
Mean	27.78
Variance	197.18
Std. Dev.	14.04
Quartiles
0.25	11.62
0.50	34.71
0.75	37.01

167-C
n =	3
Minimum	18.85
Maximum	38.87
Median	29.13
Mean	28.95
Variance	100.22
Std. Dev.	10.01
Quartiles
0.25	18.85
0.50	29.13
0.75	38.87

167-T
n =	3
Minimum	13.52
Maximum	23.44
Median	16.70
Mean	17.89
Variance	25.66
Std. Dev.	5.07
Quartiles
0.25	13.52
0.50	16.70
0.75	23.44

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