Populus genes in RNA-seq libraries




ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
CBM18 chitinase B Populus trichocarpa CAA42612.1 (NCBI query)P29031(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
            No ORF identifier associated with this protein ID.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
CBM18POPTR_0009s14390 (EnsemblPlants link)chitinase C (fragment) Populus trichocarpa CAA42614.1 (NCBI query)P29032(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0009s14390; this chitinase C (fragment) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
CBM18 unknown (WS0124_E20) Populus trichocarpa ABK95688.1 (NCBI query)A9PH35(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
            No ORF identifier associated with this protein ID.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
CBM18POPTR_0013s03900 (EnsemblPlants link)unknown (WS0125_C20) Populus trichocarpa ABK95810.1 (NCBI query)A9PHF7(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0013s03900; this unknown (WS0125_C20) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

 


 
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