Populus genes in RNA-seq libraries




ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
CBM49POPTR_0001s10560 (EnsemblPlants link)endo-1,4-β-glucanase (GH9C1) Populus trichocarpa AEO97233.1(NCBI query)K4EKS6(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0001s10560; this endo-1,4-β-glucanase (GH9C1) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
CBM49POPTR_0003s13940 (EnsemblPlants link)endo-1,4-β-glucanase (GH9C2) (GH9C2) Populus trichocarpa AEO97234.1(NCBI query)B9GXH8(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0003s13940; this endo-1,4-β-glucanase (GH9C2) (GH9C2) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
CBM49POPTR_0007s07790 (EnsemblPlants link)endo-1,4-β-glucanase (GH9C3) (GH9C3) Populus trichocarpa AEO97235.1(NCBI query)B9HGM2(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0007s07790; this endo-1,4-β-glucanase (GH9C3) (GH9C3) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
CBM49POPTR_0003s13940 (EnsemblPlants link)unknown (WS0128_N04) (fragment) Populus trichocarpa ABK96199.1 (NCBI query)A9PIJ6(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0003s13940; this unknown (WS0128_N04) (fragment) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

 


 
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