Populus genes in RNA-seq libraries



ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
CE8POPTR_0006s13670 (EnsemblPlants link)unknown (PX0011_D02) Populus trichocarpa ABK92470.1 (NCBI query)A9P7W7(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0006s13670; this unknown (PX0011_D02) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
CE8POPTR_0012s02170 (EnsemblPlants link)unknown (PX0019_B18) (fragment) Populus trichocarpa ABK92615.1 (NCBI query)A9P8B2(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0012s02170; this unknown (PX0019_B18) (fragment) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
CE8POPTR_0011s00480 (EnsemblPlants link)unknown (WS0119_O24) Populus trichocarpa ABK94644.1 (NCBI query)A9PE41(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

Normalized RNA-seq library counts for POPTR_0011s00480


unknown (WS0119_O24)
WT-C
n =
 3
Minimum 0.07
Maximum 0.33
Median 0.09
Mean 0.16
Variance 0.02
Std. Dev. 0.14
Quartiles
0.25 0.07
0.50 0.09
0.75 0.33
WT-T
n =
 3
Minimum 0.00
Maximum 0.40
Median 0.00
Mean 0.13
Variance 0.05
Std. Dev. 0.23
Quartiles
0.25 0.00
0.50 0.00
0.75 0.40
1-C
n =
 3
Minimum 0.00
Maximum 0.86
Median 0.00
Mean 0.29
Variance 0.25
Std. Dev. 0.50
Quartiles
0.25 0.00
0.50 0.00
0.75 0.86
1-T
n =
 3
Minimum 1.72
Maximum 4.70
Median 3.25
Mean 3.22
Variance 2.22
Std. Dev. 1.49
Quartiles
0.25 1.72
0.50 3.25
0.75 4.70
165-C
n =
 3
Minimum 5.31
Maximum 7.21
Median 6.02
Mean 6.18
Variance 0.92
Std. Dev. 0.96
Quartiles
0.25 5.31
0.50 6.02
0.75 7.21
165-T
n =
 3
Minimum 6.68
Maximum 15.90
Median 13.61
Mean 12.06
Variance 23.05
Std. Dev. 4.80
Quartiles
0.25 6.68
0.50 13.61
0.75 15.90
167-C
n =
 3
Minimum 2.15
Maximum 6.42
Median 2.51
Mean 3.69
Variance 5.61
Std. Dev. 2.37
Quartiles
0.25 2.15
0.50 2.51
0.75 6.42
167-T
n =
 3
Minimum 4.02
Maximum 6.76
Median 5.36
Mean 5.38
Variance 1.88
Std. Dev. 1.37
Quartiles
0.25 4.02
0.50 5.36
0.75 6.76

 

 
Return to the carbohydrate-active gene family search page.