Carbohydrate Esterase Family 8 Populus genes in RNA-seq libraries

Class Gene Protein name Organism Genbank ID UniProt ID Amino acid composition table CE8 POPTR_0006s13670 (EnsemblPlants link) unknown (PX0011_D02) Populus trichocarpa ABK92470.1 (NCBI query) A9P7W7(UniProtKB link) Amino Acid Composition(ExPASy link) Protein sequence(FASTA) No RNA-seq library record found for POPTR_0006s13670; this unknown (PX0011_D02) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

Class Gene Protein name Organism Genbank ID UniProt ID Amino acid composition table CE8 POPTR_0012s02170 (EnsemblPlants link) unknown (PX0019_B18) (fragment) Populus trichocarpa ABK92615.1 (NCBI query) A9P8B2(UniProtKB link) Amino Acid Composition(ExPASy link) Protein sequence(FASTA) No RNA-seq library record found for POPTR_0012s02170; this unknown (PX0019_B18) (fragment) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

Class Gene Protein name Organism Genbank ID UniProt ID Amino acid composition table CE8 POPTR_0011s00480 (EnsemblPlants link) unknown (WS0119_O24) Populus trichocarpa ABK94644.1 (NCBI query) A9PE41(UniProtKB link) Amino Acid Composition(ExPASy link) Protein sequence(FASTA) Normalized RNA-seq library counts for POPTR_0011s00480 unknown (WS0119_O24) WT-C n = 3 Minimum 0.07 Maximum 0.33 Median 0.09 Mean 0.16 Variance 0.02 Std. Dev. 0.14 Quartiles 0.25 0.07 0.50 0.09 0.75 0.33 WT-T n = 3 Minimum 0.00 Maximum 0.40 Median 0.00 Mean 0.13 Variance 0.05 Std. Dev. 0.23 Quartiles 0.25 0.00 0.50 0.00 0.75 0.40 1-C n = 3 Minimum 0.00 Maximum 0.86 Median 0.00 Mean 0.29 Variance 0.25 Std. Dev. 0.50 Quartiles 0.25 0.00 0.50 0.00 0.75 0.86 1-T n = 3 Minimum 1.72 Maximum 4.70 Median 3.25 Mean 3.22 Variance 2.22 Std. Dev. 1.49 Quartiles 0.25 1.72 0.50 3.25 0.75 4.70 165-C n = 3 Minimum 5.31 Maximum 7.21 Median 6.02 Mean 6.18 Variance 0.92 Std. Dev. 0.96 Quartiles 0.25 5.31 0.50 6.02 0.75 7.21 165-T n = 3 Minimum 6.68 Maximum 15.90 Median 13.61 Mean 12.06 Variance 23.05 Std. Dev. 4.80 Quartiles 0.25 6.68 0.50 13.61 0.75 15.90 167-C n = 3 Minimum 2.15 Maximum 6.42 Median 2.51 Mean 3.69 Variance 5.61 Std. Dev. 2.37 Quartiles 0.25 2.15 0.50 2.51 0.75 6.42 167-T n = 3 Minimum 4.02 Maximum 6.76 Median 5.36 Mean 5.38 Variance 1.88 Std. Dev. 1.37 Quartiles 0.25 4.02 0.50 5.36 0.75 6.76