Populus genes in RNA-seq libraries



ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH16POPTR_0002s15460 (EnsemblPlants link)broad-specificity endo-(xylo)glucanase (PtEG16;PtXTH8)Populus trichocarpa XP_002301319.1 (NCBI query)B9GPU5(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

Normalized RNA-seq library counts for POPTR_0002s15460


broad-specificity endo-(xylo)glucanase (PtEG16;PtXTH8)
WT-C
n =
 3
Minimum 3.96
Maximum 4.48
Median 4.00
Mean 4.15
Variance 0.08
Std. Dev. 0.29
Quartiles
0.25 3.96
0.50 4.00
0.75 4.48
WT-T
n =
 3
Minimum 2.76
Maximum 5.74
Median 3.65
Mean 4.05
Variance 2.34
Std. Dev. 1.53
Quartiles
0.25 2.76
0.50 3.65
0.75 5.74
1-C
n =
 3
Minimum 0.00
Maximum 5.20
Median 4.20
Mean 3.13
Variance 7.61
Std. Dev. 2.76
Quartiles
0.25 0.00
0.50 4.20
0.75 5.20
1-T
n =
 3
Minimum 2.82
Maximum 6.61
Median 5.51
Mean 4.98
Variance 3.80
Std. Dev. 1.95
Quartiles
0.25 2.82
0.50 5.51
0.75 6.61
165-C
n =
 3
Minimum 2.34
Maximum 4.54
Median 2.64
Mean 3.17
Variance 1.42
Std. Dev. 1.19
Quartiles
0.25 2.34
0.50 2.64
0.75 4.54
165-T
n =
 3
Minimum 3.54
Maximum 4.76
Median 3.77
Mean 4.02
Variance 0.42
Std. Dev. 0.65
Quartiles
0.25 3.54
0.50 3.77
0.75 4.76
167-C
n =
 3
Minimum 4.04
Maximum 4.47
Median 4.18
Mean 4.23
Variance 0.05
Std. Dev. 0.22
Quartiles
0.25 4.04
0.50 4.18
0.75 4.47
167-T
n =
 3
Minimum 4.09
Maximum 5.10
Median 4.30
Mean 4.50
Variance 0.28
Std. Dev. 0.53
Quartiles
0.25 4.09
0.50 4.30
0.75 5.10

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH16 xyloglucan endotransglycosylase/hydrolase (XTH-27) Populus trichocarpa ABM91069.1 (NCBI query)A2TEI9(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
            No ORF identifier associated with this protein ID.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH16POPTR_0019s14590 (EnsemblPlants link)unknown (PX0011_J01) Populus trichocarpa ABK92496.1 (NCBI query)A9P7Z3 (UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0019s14590; this unknown (PX0011_J01) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH16POPTR_0003s15800 (EnsemblPlants link)unknown (PX0015_B06) Populus trichocarpa ABK92523.1 (NCBI query)A9P820(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0003s15800; this unknown (PX0015_B06) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH16POPTR_0019s14590 (EnsemblPlants link)unknown (WS01116_P10) Populus trichocarpa ABK92908.1 (NCBI query)A9P7Z3 (UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0019s14590; this unknown (WS01116_P10) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH16POPTR_0019s14590 (EnsemblPlants link)unknown (WS01117_C08) Populus trichocarpa ABK92915.1 (NCBI query)A9P7Z3 (UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0019s14590; this unknown (WS01117_C08) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH16 unknown (WS01117_G10) Populus trichocarpa ABK92940.1 (NCBI query)A9P987(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
            No ORF identifier associated with this protein ID.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH16POPTR_0002s23730 (EnsemblPlants link)unknown (WS0112_F17) Populus trichocarpa ABK93796.1 (NCBI query)A9PBP3(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0002s23730; this unknown (WS0112_F17) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH16POPTR_0013s14860 (EnsemblPlants link)unknown (WS0113_J16) Populus trichocarpa ABK93943.1 (NCBI query)A9PC40(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0013s14860; this unknown (WS0113_J16) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH16POPTR_0019s14590 (EnsemblPlants link)unknown (WS0118_L12) Populus trichocarpa ABK94576.1 (NCBI query)A9P7Z3(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0019s14590; this unknown (WS0118_L12) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH16POPTR_0009s01210 (EnsemblPlants link)unknown (WS0122_O06) Populus trichocarpa ABK95370.1 (NCBI query)A9PG67(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

Normalized RNA-seq library counts for POPTR_0009s01210


unknown (WS0122_O06)
WT-C
n =
 3
Minimum 0.00
Maximum 0.20
Median 0.00
Mean 0.07
Variance 0.01
Std. Dev. 0.12
Quartiles
0.25 0.00
0.50 0.00
0.75 0.20
WT-T
n =
 3
Minimum 0.00
Maximum 0.21
Median 0.19
Mean 0.13
Variance 0.01
Std. Dev. 0.12
Quartiles
0.25 0.00
0.50 0.19
0.75 0.21
1-C
n =
 3
Minimum 0.00
Maximum 0.52
Median 0.17
Mean 0.23
Variance 0.07
Std. Dev. 0.27
Quartiles
0.25 0.00
0.50 0.17
0.75 0.52
1-T
n =
 3
Minimum 0.25
Maximum 0.61
Median 0.31
Mean 0.39
Variance 0.04
Std. Dev. 0.19
Quartiles
0.25 0.25
0.50 0.31
0.75 0.61
165-C
n =
 3
Minimum 1.10
Maximum 3.96
Median 2.79
Mean 2.62
Variance 2.07
Std. Dev. 1.44
Quartiles
0.25 1.10
0.50 2.79
0.75 3.96
165-T
n =
 3
Minimum 0.00
Maximum 2.13
Median 0.89
Mean 1.01
Variance 1.14
Std. Dev. 1.07
Quartiles
0.25 0.00
0.50 0.89
0.75 2.13
167-C
n =
 3
Minimum 0.79
Maximum 1.11
Median 0.98
Mean 0.96
Variance 0.03
Std. Dev. 0.16
Quartiles
0.25 0.79
0.50 0.98
0.75 1.11
167-T
n =
 3
Minimum 0.25
Maximum 1.19
Median 0.87
Mean 0.77
Variance 0.23
Std. Dev. 0.48
Quartiles
0.25 0.25
0.50 0.87
0.75 1.19

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH16POPTR_0004s02030 (EnsemblPlants link)unknown (WS0125_N21) Populus trichocarpa ABK95902.1 (NCBI query)A9PHP9(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0004s02030; this unknown (WS0125_N21) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

 

 
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