Glycoside Hydrolase family 17 Populus genes in RNA-seq libraries



ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH17POPTR_0014s15660 (EnsemblPlants link)unknown (PX0011_B08) Populus trichocarpa ABK92452.1 (NCBI query)A9P7U9(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0014s15660; this unknown (PX0011_B08) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH17POPTR_0009s16530 (EnsemblPlants link)WS0116_O03 Populus trichocarpa ABK94377.1 (NCBI query)A9PDC4(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0009s16530; this WS0116_O03 transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH17POPTR_0001s26210 (EnsemblPlants link)unknown (WS0122_H18) Populus trichocarpa ABK95326.1 (NCBI query)A9PG23(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

Normalized RNA-seq library counts for POPTR_0001s26210


unknown (WS0122_H18)
WT-C
n =
 3
Minimum 1.12
Maximum 5.78
Median 1.23
Mean 2.71
Variance 7.07
Std. Dev. 2.66
Quartiles
0.25 1.12
0.50 1.23
0.75 5.78
WT-T
n =
 3
Minimum 0.82
Maximum 3.25
Median 2.51
Mean 2.19
Variance 1.55
Std. Dev. 1.25
Quartiles
0.25 0.82
0.50 2.51
0.75 3.25
1-C
n =
 3
Minimum 0.00
Maximum 1.33
Median 0.98
Mean 0.77
Variance 0.48
Std. Dev. 0.69
Quartiles
0.25 0.00
0.50 0.98
0.75 1.33
1-T
n =
 3
Minimum 1.19
Maximum 7.92
Median 2.06
Mean 3.72
Variance 13.40
Std. Dev. 3.66
Quartiles
0.25 1.19
0.50 2.06
0.75 7.92
165-C
n =
 3
Minimum 1.48
Maximum 3.49
Median 1.58
Mean 2.18
Variance 1.28
Std. Dev. 1.13
Quartiles
0.25 1.48
0.50 1.58
0.75 3.49
165-T
n =
 3
Minimum 0.00
Maximum 0.93
Median 0.66
Mean 0.53
Variance 0.23
Std. Dev. 0.48
Quartiles
0.25 0.00
0.50 0.66
0.75 0.93
167-C
n =
 3
Minimum 0.88
Maximum 1.55
Median 1.50
Mean 1.31
Variance 0.14
Std. Dev. 0.37
Quartiles
0.25 0.88
0.50 1.50
0.75 1.55
167-T
n =
 3
Minimum 1.21
Maximum 1.58
Median 1.55
Mean 1.45
Variance 0.04
Std. Dev. 0.21
Quartiles
0.25 1.21
0.50 1.55
0.75 1.58

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH17POPTR_0004s16120 (EnsemblPlants link)unknown (WS0122_I17) Populus trichocarpa ABK95331.1 (NCBI query)A9PG28(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0004s16120; this unknown (WS0122_I17) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH17POPTR_0018s12960 (EnsemblPlants link)unknown (WS0122_P13) (fragment) Populus trichocarpa ABK95381.1 (NCBI query)A9PG78(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0018s12960; this unknown (WS0122_P13) (fragment) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH17POPTR_0008s05600 (EnsemblPlants link)unknown (WS0124_J02) Populus trichocarpa ABK95730.1 (NCBI query)A9PH77(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0008s05600; this unknown (WS0124_J02) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH17POPTR_0009s11830 (EnsemblPlants link)unknown (WS0125_F18) Populus trichocarpa ABK95837.1 (NCBI query)A9PHI4(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0009s11830; this unknown (WS0125_F18) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

 

 
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