Populus genes in RNA-seq libraries



ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH19 chitinase B Populus trichocarpa CAA42612.1 (NCBI query)P29031(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
            No ORF identifier associated with this protein ID.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH19POPTR_0009s14390 (EnsemblPlants link)chitinase C (fragment) Populus trichocarpa CAA42614.1 (NCBI query)P29032(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0009s14390; this chitinase C (fragment) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH19POPTR_0010s15150 (EnsemblPlants link)unknown (PX0011_C09) Populus trichocarpa ABK92465.1 (NCBI query)A9P7W2(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

Normalized RNA-seq library counts for POPTR_0010s15150


unknown (PX0011_C09)
WT-C
n =
 3
Minimum 19.81
Maximum 36.21
Median 30.82
Mean 28.95
Variance 69.87
Std. Dev. 8.36
Quartiles
0.25 19.81
0.50 30.82
0.75 36.21
WT-T
n =
 3
Minimum 18.57
Maximum 28.11
Median 26.26
Mean 24.31
Variance 25.60
Std. Dev. 5.06
Quartiles
0.25 18.57
0.50 26.26
0.75 28.11
1-C
n =
 3
Minimum 23.41
Maximum 69.53
Median 38.15
Mean 43.70
Variance 554.84
Std. Dev. 23.55
Quartiles
0.25 23.41
0.50 38.15
0.75 69.53
1-T
n =
 3
Minimum 26.63
Maximum 57.27
Median 56.85
Mean 46.92
Variance 308.71
Std. Dev. 17.57
Quartiles
0.25 26.63
0.50 56.85
0.75 57.27
165-C
n =
 3
Minimum 82.36
Maximum 125.51
Median 113.72
Mean 107.20
Variance 497.40
Std. Dev. 22.30
Quartiles
0.25 82.36
0.50 113.72
0.75 125.51
165-T
n =
 3
Minimum 103.79
Maximum 174.28
Median 150.44
Mean 142.84
Variance 1.285.57
Std. Dev. 35.85
Quartiles
0.25 103.79
0.50 150.44
0.75 174.28
167-C
n =
 3
Minimum 136.29
Maximum 161.44
Median 149.22
Mean 148.98
Variance 158.17
Std. Dev. 12.58
Quartiles
0.25 136.29
0.50 149.22
0.75 161.44
167-T
n =
 3
Minimum 89.78
Maximum 116.25
Median 112.02
Mean 106.02
Variance 202.20
Std. Dev. 14.22
Quartiles
0.25 89.78
0.50 112.02
0.75 116.25

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH19 unknown (WS0124_E20) Populus trichocarpa ABK95688.1 (NCBI query)A9PH35(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
            No ORF identifier associated with this protein ID.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH19POPTR_0014s14370 (EnsemblPlants link)unknown (WS0125_J03) Populus trichocarpa ABK95866.1(NCBI query)A9PHL3(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0014s14370; this unknown (WS0125_J03) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

 

 
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