Populus genes in RNA-seq libraries




ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH9POPTR_0001s11870 (EnsemblPlants link)cellulase, partial (Kor1) (fragment) Populus trichocarpa AFR40546.1(NCBI query)J9RQM4(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0001s11870; this cellulase, partial (Kor1) (fragment) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH9POPTR_0001s11430 (EnsemblPlants link)endo-1,4-β-glucanase (GH9B14) (GH9B14) Populus trichocarpa AEO97201.1(NCBI query)B9GK69(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0001s11430; this endo-1,4-β-glucanase (GH9B14) (GH9B14) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH9POPTR_0010s11940 (EnsemblPlants link)endo-1,4-β-glucanase (GH9B7) (GH9B7) Populus trichocarpa AEO97221.1(NCBI query)K4EKV1(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0010s11940; this endo-1,4-β-glucanase (GH9B7) (GH9B7) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH9POPTR_0008s13200 (EnsemblPlants link)endo-1,4-β-glucanase (GH9B6) (GH9B6) Populus trichocarpa AEO97193.1(NCBI query)B9HJE2(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0008s13200; this endo-1,4-β-glucanase (GH9B6) (GH9B6) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH9POPTR_0014s12170 (EnsemblPlants link)endo-1,4-β-glucanase (GH9B12) (GH9B12) Populus trichocarpa AEO97226.1(NCBI query)B9I9P6(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

Normalized RNA-seq library counts for POPTR_0014s12170


endo-1,4-β-glucanase (GH9B12) (GH9B12)
WT-C
n =
3
Minimum 39.62
Maximum 84.52
Median 82.33
Mean 68.82
Variance 640.83
Std. Dev. 25.31
Quartiles
0.25 39.62
0.50 82.33
0.75 84.52
WT-T
n =
3
Minimum 26.45
Maximum 59.52
Median 33.36
Mean 39.78
Variance 304.29
Std. Dev. 17.44
Quartiles
0.25 26.45
0.50 33.36
0.75 59.52
1-C
n =
3
Minimum 20.94
Maximum 40.22
Median 38.97
Mean 33.38
Variance 116.39
Std. Dev. 10.79
Quartiles
0.25 20.94
0.50 38.97
0.75 40.22
1-T
n =
3
Minimum 24.91
Maximum 43.32
Median 42.71
Mean 36.98
Variance 109.36
Std. Dev. 10.46
Quartiles
0.25 24.91
0.50 42.71
0.75 43.32
165-C
n =
3
Minimum 3.75
Maximum 9.25
Median 7.68
Mean 6.89
Variance 8.03
Std. Dev. 2.83
Quartiles
0.25 3.75
0.50 7.68
0.75 9.25
165-T
n =
3
Minimum 9.66
Maximum 18.99
Median 10.35
Mean 13.00
Variance 27.03
Std. Dev. 5.20
Quartiles
0.25 9.66
0.50 10.35
0.75 18.99
167-C
n =
3
Minimum 7.19
Maximum 14.01
Median 9.90
Mean 10.37
Variance 11.79
Std. Dev. 3.43
Quartiles
0.25 7.19
0.50 9.90
0.75 14.01
167-T
n =
3
Minimum 11.96
Maximum 32.64
Median 16.73
Mean 20.44
Variance 117.26
Std. Dev. 10.83
Quartiles
0.25 11.96
0.50 16.73
0.75 32.64

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH9POPTR_0003s15140 (EnsemblPlants link)endo-1,4-β-glucanase (GH9A1) (GH9A1) Populus trichocarpa AEO97211.1(NCBI query)K4EMD4(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0003s15140; this endo-1,4-β-glucanase (GH9A1) (GH9A1) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH9POPTR_0001s11870 (EnsemblPlants link)endo-β-1,4-glucanase (GH9A2;KOR1) (GH9A2) Populus trichocarpa AEO97185.1(NCBI query)K4ELN4(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0001s11870; this endo-β-1,4-glucanase (GH9A2;KOR1) (GH9A2) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH9 endo-1,4-β-glucanase (GH9A3) (GH9A3) Populus trichocarpa AEO97213.1(NCBI query)K4EKR9(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
            No ORF identifier associated with this protein ID.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH9POPTR_0002s02550 (EnsemblPlants link)endo-1,4-β-glucanase (GH9B1) (GH9B1) Populus trichocarpa AEO97215.1(NCBI query)B9GQW6(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0002s02550; this endo-1,4-β-glucanase (GH9B1) (GH9B1) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH9POPTR_0005s25890 (EnsemblPlants link)endo-1,4-β-glucanase (GH9B2) (GH9B2) Populus trichocarpa AEO97216.1(NCBI query)B9H4V5(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0005s25890; this endo-1,4-β-glucanase (GH9B2) (GH9B2) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH9POPTR_0006s23630 (EnsemblPlants link)endo-1,4-β-glucanase (GH9B4) (GH9B4) Populus trichocarpa AEO97218.1(NCBI query)B9HCR0(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0006s23630; this endo-1,4-β-glucanase (GH9B4) (GH9B4) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH9POPTR_0001s09910 (EnsemblPlants link)endo-1,4-β-glucanase (GH9B5) Populus trichocarpa AEO97219.1(NCBI query)K4EKV6(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0001s09910; this endo-1,4-β-glucanase (GH9B5) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH9POPTR_0015s14720 (EnsemblPlants link)endo-1,4-β-glucanase (GH9B8) (GH9B8) Populus trichocarpa AEO97222.1(NCBI query)B9ICT3(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

Normalized RNA-seq library counts for POPTR_0015s14720


endo-1,4-β-glucanase (GH9B8) (GH9B8)
WT-C
n =
3
Minimum 0.13
Maximum 0.54
Median 0.25
Mean 0.31
Variance 0.04
Std. Dev. 0.21
Quartiles
0.25 0.13
0.50 0.25
0.75 0.54
WT-T
n =
3
Minimum 0.27
Maximum 0.35
Median 0.31
Mean 0.31
Variance 0.00
Std. Dev. 0.04
Quartiles
0.25 0.27
0.50 0.31
0.75 0.35
1-C
n =
3
Minimum 0.58
Maximum 2.97
Median 0.87
Mean 1.47
Variance 1.70
Std. Dev. 1.30
Quartiles
0.25 0.58
0.50 0.87
0.75 2.97
1-T
n =
3
Minimum 0.38
Maximum 0.77
Median 0.43
Mean 0.53
Variance 0.05
Std. Dev. 0.21
Quartiles
0.25 0.38
0.50 0.43
0.75 0.77
165-C
n =
3
Minimum 0.82
Maximum 1.23
Median 0.92
Mean 0.99
Variance 0.05
Std. Dev. 0.21
Quartiles
0.25 0.82
0.50 0.92
0.75 1.23
165-T
n =
3
Minimum 0.00
Maximum 0.49
Median 0.25
Mean 0.25
Variance 0.06
Std. Dev. 0.25
Quartiles
0.25 0.00
0.50 0.25
0.75 0.49
167-C
n =
3
Minimum 0.65
Maximum 1.23
Median 0.73
Mean 0.87
Variance 0.10
Std. Dev. 0.31
Quartiles
0.25 0.65
0.50 0.73
0.75 1.23
167-T
n =
3
Minimum 0.81
Maximum 1.02
Median 0.85
Mean 0.89
Variance 0.01
Std. Dev. 0.11
Quartiles
0.25 0.81
0.50 0.85
0.75 1.02

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH9 endo-1,4-β-glucanase (GH9B9) (GH9B9) Populus trichocarpa AEO97223.1(NCBI query)K4EKS2(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
            No ORF identifier associated with this protein ID.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH9POPTR_0009s12690 (EnsemblPlants link)endo-1,4-β-glucanase (GH9B10) (GH9B10) Populus trichocarpa AEO97224.1(NCBI query)K4ELD8(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0009s12690; this endo-1,4-β-glucanase (GH9B10) (GH9B10) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH9POPTR_0004s16900 (EnsemblPlants link)endo-1,4-β-glucanase (GH9B11) (GH9B11) Populus trichocarpa AEO97225.1(NCBI query)K4EKR4(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

Normalized RNA-seq library counts for POPTR_0004s16900


endo-1,4-β-glucanase (GH9B11) (GH9B11)
WT-C
n =
3
Minimum 7.32
Maximum 9.24
Median 8.24
Mean 8.27
Variance 0.92
Std. Dev. 0.96
Quartiles
0.25 7.32
0.50 8.24
0.75 9.24
WT-T
n =
3
Minimum 7.77
Maximum 12.53
Median 8.23
Mean 9.51
Variance 6.89
Std. Dev. 2.63
Quartiles
0.25 7.77
0.50 8.23
0.75 12.53
1-C
n =
3
Minimum 6.92
Maximum 11.14
Median 9.25
Mean 9.10
Variance 4.47
Std. Dev. 2.11
Quartiles
0.25 6.92
0.50 9.25
0.75 11.14
1-T
n =
3
Minimum 4.95
Maximum 8.65
Median 5.89
Mean 6.50
Variance 3.70
Std. Dev. 1.92
Quartiles
0.25 4.95
0.50 5.89
0.75 8.65
165-C
n =
3
Minimum 2.98
Maximum 5.56
Median 3.14
Mean 3.89
Variance 2.09
Std. Dev. 1.45
Quartiles
0.25 2.98
0.50 3.14
0.75 5.56
165-T
n =
3
Minimum 0.00
Maximum 4.09
Median 3.48
Mean 2.52
Variance 4.87
Std. Dev. 2.21
Quartiles
0.25 0.00
0.50 3.48
0.75 4.09
167-C
n =
3
Minimum 2.40
Maximum 6.51
Median 3.92
Mean 4.28
Variance 4.32
Std. Dev. 2.08
Quartiles
0.25 2.40
0.50 3.92
0.75 6.51
167-T
n =
3
Minimum 3.94
Maximum 7.41
Median 4.37
Mean 5.24
Variance 3.58
Std. Dev. 1.89
Quartiles
0.25 3.94
0.50 4.37
0.75 7.41

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH9 endo-1,4-β-glucanase (GH9B13) (GH9B13) Populus trichocarpa AEO97227.1(NCBI query)K4ELN7(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
            No ORF identifier associated with this protein ID.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH9POPTR_0019s09740 (EnsemblPlants link)endo-1,4-β-glucanase (GH9B16) (GH9B16) Populus trichocarpa AEO97230.1(NCBI query)B9N1M4(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0019s09740; this endo-1,4-β-glucanase (GH9B16) (GH9B16) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH9 endo-1,4-β-glucanase (GH9B17) (GH9B17) Populus trichocarpa AEO97231.1(NCBI query)K4EMD8(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
            No ORF identifier associated with this protein ID.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH9 endo-1,4-β-glucanase (GH9B18) (GH9B18) Populus trichocarpa AEO97232.1(NCBI query)K4ELN8(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
            No ORF identifier associated with this protein ID.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH9POPTR_0001s10560 (EnsemblPlants link)endo-1,4-β-glucanase (GH9C1) Populus trichocarpa AEO97233.1(NCBI query)K4EKS6(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0001s10560; this endo-1,4-β-glucanase (GH9C1) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH9POPTR_0003s13940 (EnsemblPlants link)endo-1,4-β-glucanase (GH9C2) (GH9C2) Populus trichocarpa AEO97234.1(NCBI query)B9GXH8(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0003s13940; this endo-1,4-β-glucanase (GH9C2) (GH9C2) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH9POPTR_0007s07790 (EnsemblPlants link)endo-1,4-β-glucanase (GH9C3) (GH9C3) Populus trichocarpa AEO97235.1(NCBI query)B9HGM2(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0007s07790; this endo-1,4-β-glucanase (GH9C3) (GH9C3) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH9POPTR_0008s07900 (EnsemblPlants link)endo-1,4-β-glucanase (GH9A4) (GH9A4) Populus trichocarpa AEO97214.1(NCBI query)B9HI06(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0008s07900; this endo-1,4-β-glucanase (GH9A4) (GH9A4) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH9 endo-1,4-β-glucanase (GH9B3) (GH9B3) Populus trichocarpa AEO97217.1(NCBI query)B9MXH4(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
            No ORF identifier associated with this protein ID.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH9POPTR_0008s13200 (EnsemblPlants link)unknown (PX0011_E13) Populus trichocarpa ABK92482.1 (NCBI query)A9P7X9(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0008s13200; this unknown (PX0011_E13) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GH9POPTR_0003s13940 (EnsemblPlants link)unknown (WS0128_N04) (fragment) Populus trichocarpa ABK96199.1 (NCBI query)A9PIJ6(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)
No RNA-seq library record found for POPTR_0003s13940; this unknown (WS0128_N04) (fragment) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

 


 
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