Gene Family Search Results

Populus genes in RNA-seq libraries

Class

Gene

Protein name

Organism

Genbank ID

UniProt ID

Amino acid composition table

GH9

POPTR_0001s11870 (EnsemblPlants link)

cellulase, partial (Kor1) (fragment)

Populus trichocarpa

AFR40546.1(NCBI query)

J9RQM4(UniProtKB link)

Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

No RNA-seq library record found for POPTR_0001s11870; this cellulase, partial (Kor1) (fragment) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

Class

Gene

Protein name

Organism

Genbank ID

UniProt ID

Amino acid composition table

GH9

POPTR_0001s11430 (EnsemblPlants link)

endo-1,4-β-glucanase (GH9B14) (GH9B14)

Populus trichocarpa

AEO97201.1(NCBI query)

B9GK69(UniProtKB link)

Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

No RNA-seq library record found for POPTR_0001s11430; this endo-1,4-β-glucanase (GH9B14) (GH9B14) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

Class

Gene

Protein name

Organism

Genbank ID

UniProt ID

Amino acid composition table

GH9

POPTR_0010s11940 (EnsemblPlants link)

endo-1,4-β-glucanase (GH9B7) (GH9B7)

Populus trichocarpa

AEO97221.1(NCBI query)

K4EKV1(UniProtKB link)

Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

No RNA-seq library record found for POPTR_0010s11940; this endo-1,4-β-glucanase (GH9B7) (GH9B7) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

Class

Gene

Protein name

Organism

Genbank ID

UniProt ID

Amino acid composition table

GH9

POPTR_0008s13200 (EnsemblPlants link)

endo-1,4-β-glucanase (GH9B6) (GH9B6)

Populus trichocarpa

AEO97193.1(NCBI query)

B9HJE2(UniProtKB link)

Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

No RNA-seq library record found for POPTR_0008s13200; this endo-1,4-β-glucanase (GH9B6) (GH9B6) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

Class

Gene

Protein name

Organism

Genbank ID

UniProt ID

Amino acid composition table

GH9

POPTR_0014s12170 (EnsemblPlants link)

endo-1,4-β-glucanase (GH9B12) (GH9B12)

Populus trichocarpa

AEO97226.1(NCBI query)

B9I9P6(UniProtKB link)

Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

Normalized RNA-seq library counts for POPTR_0014s12170

endo-1,4-β-glucanase (GH9B12) (GH9B12)

WT-C
n =	3
Minimum	39.62
Maximum	84.52
Median	82.33
Mean	68.82
Variance	640.83
Std. Dev.	25.31
Quartiles
0.25	39.62
0.50	82.33
0.75	84.52

WT-T
n =	3
Minimum	26.45
Maximum	59.52
Median	33.36
Mean	39.78
Variance	304.29
Std. Dev.	17.44
Quartiles
0.25	26.45
0.50	33.36
0.75	59.52

1-C
n =	3
Minimum	20.94
Maximum	40.22
Median	38.97
Mean	33.38
Variance	116.39
Std. Dev.	10.79
Quartiles
0.25	20.94
0.50	38.97
0.75	40.22

1-T
n =	3
Minimum	24.91
Maximum	43.32
Median	42.71
Mean	36.98
Variance	109.36
Std. Dev.	10.46
Quartiles
0.25	24.91
0.50	42.71
0.75	43.32

165-C
n =	3
Minimum	3.75
Maximum	9.25
Median	7.68
Mean	6.89
Variance	8.03
Std. Dev.	2.83
Quartiles
0.25	3.75
0.50	7.68
0.75	9.25

165-T
n =	3
Minimum	9.66
Maximum	18.99
Median	10.35
Mean	13.00
Variance	27.03
Std. Dev.	5.20
Quartiles
0.25	9.66
0.50	10.35
0.75	18.99

167-C
n =	3
Minimum	7.19
Maximum	14.01
Median	9.90
Mean	10.37
Variance	11.79
Std. Dev.	3.43
Quartiles
0.25	7.19
0.50	9.90
0.75	14.01

167-T
n =	3
Minimum	11.96
Maximum	32.64
Median	16.73
Mean	20.44
Variance	117.26
Std. Dev.	10.83
Quartiles
0.25	11.96
0.50	16.73
0.75	32.64

Class

Gene

Protein name

Organism

Genbank ID

UniProt ID

Amino acid composition table

GH9

POPTR_0003s15140 (EnsemblPlants link)

endo-1,4-β-glucanase (GH9A1) (GH9A1)

Populus trichocarpa

AEO97211.1(NCBI query)

K4EMD4(UniProtKB link)

Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

No RNA-seq library record found for POPTR_0003s15140; this endo-1,4-β-glucanase (GH9A1) (GH9A1) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

Class

Gene

Protein name

Organism

Genbank ID

UniProt ID

Amino acid composition table

GH9

POPTR_0001s11870 (EnsemblPlants link)

endo-β-1,4-glucanase (GH9A2;KOR1) (GH9A2)

Populus trichocarpa

AEO97185.1(NCBI query)

K4ELN4(UniProtKB link)

Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

No RNA-seq library record found for POPTR_0001s11870; this endo-β-1,4-glucanase (GH9A2;KOR1) (GH9A2) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

Class	Gene	Protein name	Organism	Genbank ID	UniProt ID	Amino acid composition table
GH9		endo-1,4-β-glucanase (GH9A3) (GH9A3)	Populus trichocarpa	AEO97213.1(NCBI query)	K4EKR9(UniProtKB link)	Amino Acid Composition(ExPASy link) Protein sequence(FASTA)
No ORF identifier associated with this protein ID.

Class

Gene

Protein name

Organism

Genbank ID

UniProt ID

Amino acid composition table

GH9

POPTR_0002s02550 (EnsemblPlants link)

endo-1,4-β-glucanase (GH9B1) (GH9B1)

Populus trichocarpa

AEO97215.1(NCBI query)

B9GQW6(UniProtKB link)

Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

No RNA-seq library record found for POPTR_0002s02550; this endo-1,4-β-glucanase (GH9B1) (GH9B1) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

Class

Gene

Protein name

Organism

Genbank ID

UniProt ID

Amino acid composition table

GH9

POPTR_0005s25890 (EnsemblPlants link)

endo-1,4-β-glucanase (GH9B2) (GH9B2)

Populus trichocarpa

AEO97216.1(NCBI query)

B9H4V5(UniProtKB link)

Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

No RNA-seq library record found for POPTR_0005s25890; this endo-1,4-β-glucanase (GH9B2) (GH9B2) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

Class

Gene

Protein name

Organism

Genbank ID

UniProt ID

Amino acid composition table

GH9

POPTR_0006s23630 (EnsemblPlants link)

endo-1,4-β-glucanase (GH9B4) (GH9B4)

Populus trichocarpa

AEO97218.1(NCBI query)

B9HCR0(UniProtKB link)

Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

No RNA-seq library record found for POPTR_0006s23630; this endo-1,4-β-glucanase (GH9B4) (GH9B4) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

Class

Gene

Protein name

Organism

Genbank ID

UniProt ID

Amino acid composition table

GH9

POPTR_0001s09910 (EnsemblPlants link)

endo-1,4-β-glucanase (GH9B5)

Populus trichocarpa

AEO97219.1(NCBI query)

K4EKV6(UniProtKB link)

Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

No RNA-seq library record found for POPTR_0001s09910; this endo-1,4-β-glucanase (GH9B5) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

Class

Gene

Protein name

Organism

Genbank ID

UniProt ID

Amino acid composition table

GH9

POPTR_0015s14720 (EnsemblPlants link)

endo-1,4-β-glucanase (GH9B8) (GH9B8)

Populus trichocarpa

AEO97222.1(NCBI query)

B9ICT3(UniProtKB link)

Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

Normalized RNA-seq library counts for POPTR_0015s14720

endo-1,4-β-glucanase (GH9B8) (GH9B8)

WT-C
n =	3
Minimum	0.13
Maximum	0.54
Median	0.25
Mean	0.31
Variance	0.04
Std. Dev.	0.21
Quartiles
0.25	0.13
0.50	0.25
0.75	0.54

WT-T
n =	3
Minimum	0.27
Maximum	0.35
Median	0.31
Mean	0.31
Variance	0.00
Std. Dev.	0.04
Quartiles
0.25	0.27
0.50	0.31
0.75	0.35

1-C
n =	3
Minimum	0.58
Maximum	2.97
Median	0.87
Mean	1.47
Variance	1.70
Std. Dev.	1.30
Quartiles
0.25	0.58
0.50	0.87
0.75	2.97

1-T
n =	3
Minimum	0.38
Maximum	0.77
Median	0.43
Mean	0.53
Variance	0.05
Std. Dev.	0.21
Quartiles
0.25	0.38
0.50	0.43
0.75	0.77

165-C
n =	3
Minimum	0.82
Maximum	1.23
Median	0.92
Mean	0.99
Variance	0.05
Std. Dev.	0.21
Quartiles
0.25	0.82
0.50	0.92
0.75	1.23

165-T
n =	3
Minimum	0.00
Maximum	0.49
Median	0.25
Mean	0.25
Variance	0.06
Std. Dev.	0.25
Quartiles
0.25	0.00
0.50	0.25
0.75	0.49

167-C
n =	3
Minimum	0.65
Maximum	1.23
Median	0.73
Mean	0.87
Variance	0.10
Std. Dev.	0.31
Quartiles
0.25	0.65
0.50	0.73
0.75	1.23

167-T
n =	3
Minimum	0.81
Maximum	1.02
Median	0.85
Mean	0.89
Variance	0.01
Std. Dev.	0.11
Quartiles
0.25	0.81
0.50	0.85
0.75	1.02

Class	Gene	Protein name	Organism	Genbank ID	UniProt ID	Amino acid composition table
GH9		endo-1,4-β-glucanase (GH9B9) (GH9B9)	Populus trichocarpa	AEO97223.1(NCBI query)	K4EKS2(UniProtKB link)	Amino Acid Composition(ExPASy link) Protein sequence(FASTA)
No ORF identifier associated with this protein ID.

Class

Gene

Protein name

Organism

Genbank ID

UniProt ID

Amino acid composition table

GH9

POPTR_0009s12690 (EnsemblPlants link)

endo-1,4-β-glucanase (GH9B10) (GH9B10)

Populus trichocarpa

AEO97224.1(NCBI query)

K4ELD8(UniProtKB link)

Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

No RNA-seq library record found for POPTR_0009s12690; this endo-1,4-β-glucanase (GH9B10) (GH9B10) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

Class

Gene

Protein name

Organism

Genbank ID

UniProt ID

Amino acid composition table

GH9

POPTR_0004s16900 (EnsemblPlants link)

endo-1,4-β-glucanase (GH9B11) (GH9B11)

Populus trichocarpa

AEO97225.1(NCBI query)

K4EKR4(UniProtKB link)

Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

Normalized RNA-seq library counts for POPTR_0004s16900

endo-1,4-β-glucanase (GH9B11) (GH9B11)

WT-C
n =	3
Minimum	7.32
Maximum	9.24
Median	8.24
Mean	8.27
Variance	0.92
Std. Dev.	0.96
Quartiles
0.25	7.32
0.50	8.24
0.75	9.24

WT-T
n =	3
Minimum	7.77
Maximum	12.53
Median	8.23
Mean	9.51
Variance	6.89
Std. Dev.	2.63
Quartiles
0.25	7.77
0.50	8.23
0.75	12.53

1-C
n =	3
Minimum	6.92
Maximum	11.14
Median	9.25
Mean	9.10
Variance	4.47
Std. Dev.	2.11
Quartiles
0.25	6.92
0.50	9.25
0.75	11.14

1-T
n =	3
Minimum	4.95
Maximum	8.65
Median	5.89
Mean	6.50
Variance	3.70
Std. Dev.	1.92
Quartiles
0.25	4.95
0.50	5.89
0.75	8.65

165-C
n =	3
Minimum	2.98
Maximum	5.56
Median	3.14
Mean	3.89
Variance	2.09
Std. Dev.	1.45
Quartiles
0.25	2.98
0.50	3.14
0.75	5.56

165-T
n =	3
Minimum	0.00
Maximum	4.09
Median	3.48
Mean	2.52
Variance	4.87
Std. Dev.	2.21
Quartiles
0.25	0.00
0.50	3.48
0.75	4.09

167-C
n =	3
Minimum	2.40
Maximum	6.51
Median	3.92
Mean	4.28
Variance	4.32
Std. Dev.	2.08
Quartiles
0.25	2.40
0.50	3.92
0.75	6.51

167-T
n =	3
Minimum	3.94
Maximum	7.41
Median	4.37
Mean	5.24
Variance	3.58
Std. Dev.	1.89
Quartiles
0.25	3.94
0.50	4.37
0.75	7.41

Class	Gene	Protein name	Organism	Genbank ID	UniProt ID	Amino acid composition table
GH9		endo-1,4-β-glucanase (GH9B13) (GH9B13)	Populus trichocarpa	AEO97227.1(NCBI query)	K4ELN7(UniProtKB link)	Amino Acid Composition(ExPASy link) Protein sequence(FASTA)
No ORF identifier associated with this protein ID.

Class

Gene

Protein name

Organism

Genbank ID

UniProt ID

Amino acid composition table

GH9

POPTR_0019s09740 (EnsemblPlants link)

endo-1,4-β-glucanase (GH9B16) (GH9B16)

Populus trichocarpa

AEO97230.1(NCBI query)

B9N1M4(UniProtKB link)

Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

No RNA-seq library record found for POPTR_0019s09740; this endo-1,4-β-glucanase (GH9B16) (GH9B16) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

Class	Gene	Protein name	Organism	Genbank ID	UniProt ID	Amino acid composition table
GH9		endo-1,4-β-glucanase (GH9B17) (GH9B17)	Populus trichocarpa	AEO97231.1(NCBI query)	K4EMD8(UniProtKB link)	Amino Acid Composition(ExPASy link) Protein sequence(FASTA)
No ORF identifier associated with this protein ID.

Class	Gene	Protein name	Organism	Genbank ID	UniProt ID	Amino acid composition table
GH9		endo-1,4-β-glucanase (GH9B18) (GH9B18)	Populus trichocarpa	AEO97232.1(NCBI query)	K4ELN8(UniProtKB link)	Amino Acid Composition(ExPASy link) Protein sequence(FASTA)
No ORF identifier associated with this protein ID.

Class

Gene

Protein name

Organism

Genbank ID

UniProt ID

Amino acid composition table

GH9

POPTR_0001s10560 (EnsemblPlants link)

endo-1,4-β-glucanase (GH9C1)

Populus trichocarpa

AEO97233.1(NCBI query)

K4EKS6(UniProtKB link)

Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

No RNA-seq library record found for POPTR_0001s10560; this endo-1,4-β-glucanase (GH9C1) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

Class

Gene

Protein name

Organism

Genbank ID

UniProt ID

Amino acid composition table

GH9

POPTR_0003s13940 (EnsemblPlants link)

endo-1,4-β-glucanase (GH9C2) (GH9C2)

Populus trichocarpa

AEO97234.1(NCBI query)

B9GXH8(UniProtKB link)

Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

No RNA-seq library record found for POPTR_0003s13940; this endo-1,4-β-glucanase (GH9C2) (GH9C2) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

Class

Gene

Protein name

Organism

Genbank ID

UniProt ID

Amino acid composition table

GH9

POPTR_0007s07790 (EnsemblPlants link)

endo-1,4-β-glucanase (GH9C3) (GH9C3)

Populus trichocarpa

AEO97235.1(NCBI query)

B9HGM2(UniProtKB link)

Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

No RNA-seq library record found for POPTR_0007s07790; this endo-1,4-β-glucanase (GH9C3) (GH9C3) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

Class

Gene

Protein name

Organism

Genbank ID

UniProt ID

Amino acid composition table

GH9

POPTR_0008s07900 (EnsemblPlants link)

endo-1,4-β-glucanase (GH9A4) (GH9A4)

Populus trichocarpa

AEO97214.1(NCBI query)

B9HI06(UniProtKB link)

Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

No RNA-seq library record found for POPTR_0008s07900; this endo-1,4-β-glucanase (GH9A4) (GH9A4) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

Class	Gene	Protein name	Organism	Genbank ID	UniProt ID	Amino acid composition table
GH9		endo-1,4-β-glucanase (GH9B3) (GH9B3)	Populus trichocarpa	AEO97217.1(NCBI query)	B9MXH4(UniProtKB link)	Amino Acid Composition(ExPASy link) Protein sequence(FASTA)
No ORF identifier associated with this protein ID.

Class

Gene

Protein name

Organism

Genbank ID

UniProt ID

Amino acid composition table

GH9

POPTR_0008s13200 (EnsemblPlants link)

unknown (PX0011_E13)

Populus trichocarpa

ABK92482.1 (NCBI query)

A9P7X9(UniProtKB link)

Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

No RNA-seq library record found for POPTR_0008s13200; this unknown (PX0011_E13) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

Class

Gene

Protein name

Organism

Genbank ID

UniProt ID

Amino acid composition table

GH9

POPTR_0003s13940 (EnsemblPlants link)

unknown (WS0128_N04) (fragment)

Populus trichocarpa

ABK96199.1 (NCBI query)

A9PIJ6(UniProtKB link)

Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

No RNA-seq library record found for POPTR_0003s13940; this unknown (WS0128_N04) (fragment) transcript may have been excluded from differential analysis due to mapping non-uniquely to the P. trichocarpa reference (this prevents inflation of transcript counts). This can occur in families with very high (>99%) homology.

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