Populus genes in RNA-seq libraries




ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GT43POPTR_0006s13320 (EnsemblPlants link)glycosyltransferase GT43A (GT43A ) Populus trichocarpa AEG25423.1 (NCBI query)B9MT92(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

Normalized RNA-seq library counts for POPTR_0006s13320


glycosyltransferase GT43A (GT43A )
WT-C
n =
3
Minimum 6.47
Maximum 11.80
Median 7.41
Mean 8.56
Variance 8.09
Std. Dev. 2.85
Quartiles
0.25 6.47
0.50 7.41
0.75 11.80
WT-T
n =
3
Minimum 1.74
Maximum 8.53
Median 7.72
Mean 6.00
Variance 13.75
Std. Dev. 3.71
Quartiles
0.25 1.74
0.50 7.72
0.75 8.53
1-C
n =
3
Minimum 8.73
Maximum 20.21
Median 15.20
Mean 14.71
Variance 33.13
Std. Dev. 5.76
Quartiles
0.25 8.73
0.50 15.20
0.75 20.21
1-T
n =
3
Minimum 5.84
Maximum 8.20
Median 7.20
Mean 7.08
Variance 1.40
Std. Dev. 1.18
Quartiles
0.25 5.84
0.50 7.20
0.75 8.20
165-C
n =
3
Minimum 23.03
Maximum 39.23
Median 32.11
Mean 31.46
Variance 65.93
Std. Dev. 8.12
Quartiles
0.25 23.03
0.50 32.11
0.75 39.23
165-T
n =
3
Minimum 18.35
Maximum 45.97
Median 26.32
Mean 30.21
Variance 202.08
Std. Dev. 14.22
Quartiles
0.25 18.35
0.50 26.32
0.75 45.97
167-C
n =
3
Minimum 24.32
Maximum 29.66
Median 28.87
Mean 27.62
Variance 8.31
Std. Dev. 2.88
Quartiles
0.25 24.32
0.50 28.87
0.75 29.66
167-T
n =
3
Minimum 17.51
Maximum 35.34
Median 33.05
Mean 28.63
Variance 94.11
Std. Dev. 9.70
Quartiles
0.25 17.51
0.50 33.05
0.75 35.34

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GT43POPTR_0016s08770 (EnsemblPlants link)glycosyltransferase GT43B (GT43B ) Populus trichocarpa AEG25424.1 (NCBI query)B9IJ10(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

Normalized RNA-seq library counts for POPTR_0016s08770


glycosyltransferase GT43B (GT43B )
WT-C
n =
3
Minimum 6.10
Maximum 9.57
Median 6.11
Mean 7.26
Variance 4.00
Std. Dev. 2.00
Quartiles
0.25 6.10
0.50 6.11
0.75 9.57
WT-T
n =
3
Minimum 2.29
Maximum 7.14
Median 6.02
Mean 5.15
Variance 6.45
Std. Dev. 2.54
Quartiles
0.25 2.29
0.50 6.02
0.75 7.14
1-C
n =
3
Minimum 3.80
Maximum 18.03
Median 11.06
Mean 10.96
Variance 50.63
Std. Dev. 7.12
Quartiles
0.25 3.80
0.50 11.06
0.75 18.03
1-T
n =
3
Minimum 5.03
Maximum 5.98
Median 5.53
Mean 5.51
Variance 0.23
Std. Dev. 0.48
Quartiles
0.25 5.03
0.50 5.53
0.75 5.98
165-C
n =
3
Minimum 15.63
Maximum 37.97
Median 20.69
Mean 24.76
Variance 137.21
Std. Dev. 11.71
Quartiles
0.25 15.63
0.50 20.69
0.75 37.97
165-T
n =
3
Minimum 13.60
Maximum 24.25
Median 18.25
Mean 18.70
Variance 28.51
Std. Dev. 5.34
Quartiles
0.25 13.60
0.50 18.25
0.75 24.25
167-C
n =
3
Minimum 11.78
Maximum 23.00
Median 14.01
Mean 16.26
Variance 35.28
Std. Dev. 5.94
Quartiles
0.25 11.78
0.50 14.01
0.75 23.00
167-T
n =
3
Minimum 10.28
Maximum 21.94
Median 19.31
Mean 17.18
Variance 37.40
Std. Dev. 6.12
Quartiles
0.25 10.28
0.50 19.31
0.75 21.94

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GT43POPTR_0007s10660 (EnsemblPlants link)glycosyltransferase GT43C (GT43C) Populus trichocarpa AEG25425.1 (NCBI query)B9HH87(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

Normalized RNA-seq library counts for POPTR_0007s10660


glycosyltransferase GT43C (GT43C)
WT-C
n =
3
Minimum 8.60
Maximum 18.09
Median 16.30
Mean 14.33
Variance 25.43
Std. Dev. 5.04
Quartiles
0.25 8.60
0.50 16.30
0.75 18.09
WT-T
n =
3
Minimum 6.60
Maximum 16.41
Median 14.03
Mean 12.35
Variance 26.18
Std. Dev. 5.12
Quartiles
0.25 6.60
0.50 14.03
0.75 16.41
1-C
n =
3
Minimum 6.34
Maximum 21.64
Median 13.47
Mean 13.82
Variance 58.61
Std. Dev. 7.66
Quartiles
0.25 6.34
0.50 13.47
0.75 21.64
1-T
n =
3
Minimum 6.09
Maximum 12.44
Median 8.54
Mean 9.02
Variance 10.26
Std. Dev. 3.20
Quartiles
0.25 6.09
0.50 8.54
0.75 12.44
165-C
n =
3
Minimum 9.71
Maximum 14.76
Median 12.14
Mean 12.20
Variance 6.38
Std. Dev. 2.53
Quartiles
0.25 9.71
0.50 12.14
0.75 14.76
165-T
n =
3
Minimum 4.66
Maximum 25.51
Median 17.07
Mean 15.75
Variance 109.99
Std. Dev. 10.49
Quartiles
0.25 4.66
0.50 17.07
0.75 25.51
167-C
n =
3
Minimum 11.87
Maximum 21.86
Median 17.11
Mean 16.95
Variance 24.97
Std. Dev. 5.00
Quartiles
0.25 11.87
0.50 17.11
0.75 21.86
167-T
n =
3
Minimum 13.04
Maximum 21.66
Median 13.22
Mean 15.97
Variance 24.26
Std. Dev. 4.93
Quartiles
0.25 13.04
0.50 13.22
0.75 21.66

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GT43POPTR_0005s18500 (EnsemblPlants link)glycosyltransferase GT43D (GT43D) Populus trichocarpa AEG25426.1 (NCBI query)F6M1G6(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

Normalized RNA-seq library counts for POPTR_0005s18500


glycosyltransferase GT43D (GT43D)
WT-C
n =
3
Minimum 3.47
Maximum 3.69
Median 3.60
Mean 3.59
Variance 0.01
Std. Dev. 0.11
Quartiles
0.25 3.47
0.50 3.60
0.75 3.69
WT-T
n =
3
Minimum 3.86
Maximum 5.41
Median 5.22
Mean 4.83
Variance 0.71
Std. Dev. 0.85
Quartiles
0.25 3.86
0.50 5.22
0.75 5.41
1-C
n =
3
Minimum 5.56
Maximum 10.68
Median 5.56
Mean 7.27
Variance 8.74
Std. Dev. 2.96
Quartiles
0.25 5.56
0.50 5.56
0.75 10.68
1-T
n =
3
Minimum 3.93
Maximum 5.31
Median 4.70
Mean 4.65
Variance 0.48
Std. Dev. 0.69
Quartiles
0.25 3.93
0.50 4.70
0.75 5.31
165-C
n =
3
Minimum 3.28
Maximum 8.23
Median 4.23
Mean 5.25
Variance 6.90
Std. Dev. 2.63
Quartiles
0.25 3.28
0.50 4.23
0.75 8.23
165-T
n =
3
Minimum 6.38
Maximum 11.46
Median 9.16
Mean 9.00
Variance 6.47
Std. Dev. 2.54
Quartiles
0.25 6.38
0.50 9.16
0.75 11.46
167-C
n =
3
Minimum 3.71
Maximum 8.00
Median 6.29
Mean 6.00
Variance 4.66
Std. Dev. 2.16
Quartiles
0.25 3.71
0.50 6.29
0.75 8.00
167-T
n =
3
Minimum 4.49
Maximum 5.53
Median 4.95
Mean 4.99
Variance 0.27
Std. Dev. 0.52
Quartiles
0.25 4.49
0.50 4.95
0.75 5.53

ClassGeneProtein nameOrganismGenbank IDUniProt IDAmino acid composition table
GT43POPTR_0002s10790 (EnsemblPlants link)glycosyltransferase GT43E (GT43E) Populus trichocarpa AEG25427.1 (NCBI query)F6M1G7(UniProtKB link)Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

Normalized RNA-seq library counts for POPTR_0002s10790


glycosyltransferase GT43E (GT43E)
WT-C
n =
3
Minimum 7.50
Maximum 9.48
Median 7.90
Mean 8.29
Variance 1.10
Std. Dev. 1.05
Quartiles
0.25 7.50
0.50 7.90
0.75 9.48
WT-T
n =
3
Minimum 6.03
Maximum 9.40
Median 8.01
Mean 7.81
Variance 2.87
Std. Dev. 1.69
Quartiles
0.25 6.03
0.50 8.01
0.75 9.40
1-C
n =
3
Minimum 5.71
Maximum 8.75
Median 6.07
Mean 6.84
Variance 2.76
Std. Dev. 1.66
Quartiles
0.25 5.71
0.50 6.07
0.75 8.75
1-T
n =
3
Minimum 6.37
Maximum 8.44
Median 7.99
Mean 7.60
Variance 1.19
Std. Dev. 1.09
Quartiles
0.25 6.37
0.50 7.99
0.75 8.44
165-C
n =
3
Minimum 5.65
Maximum 8.77
Median 7.36
Mean 7.26
Variance 2.44
Std. Dev. 1.56
Quartiles
0.25 5.65
0.50 7.36
0.75 8.77
165-T
n =
3
Minimum 3.61
Maximum 10.56
Median 6.52
Mean 6.90
Variance 12.18
Std. Dev. 3.49
Quartiles
0.25 3.61
0.50 6.52
0.75 10.56
167-C
n =
3
Minimum 6.64
Maximum 8.54
Median 7.30
Mean 7.49
Variance 0.93
Std. Dev. 0.96
Quartiles
0.25 6.64
0.50 7.30
0.75 8.54
167-T
n =
3
Minimum 9.42
Maximum 10.96
Median 9.71
Mean 10.03
Variance 0.67
Std. Dev. 0.82
Quartiles
0.25 9.42
0.50 9.71
0.75 10.96

 


 
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