Gene Family Search Results

Populus genes in RNA-seq libraries

Class

Gene

Protein name

Organism

Genbank ID

UniProt ID

Amino acid composition table

GT43

POPTR_0006s13320 (EnsemblPlants link)

glycosyltransferase GT43A (GT43A )

Populus trichocarpa

AEG25423.1 (NCBI query)

B9MT92(UniProtKB link)

Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

Normalized RNA-seq library counts for POPTR_0006s13320

glycosyltransferase GT43A (GT43A )

WT-C
n =	3
Minimum	6.47
Maximum	11.80
Median	7.41
Mean	8.56
Variance	8.09
Std. Dev.	2.85
Quartiles
0.25	6.47
0.50	7.41
0.75	11.80

WT-T
n =	3
Minimum	1.74
Maximum	8.53
Median	7.72
Mean	6.00
Variance	13.75
Std. Dev.	3.71
Quartiles
0.25	1.74
0.50	7.72
0.75	8.53

1-C
n =	3
Minimum	8.73
Maximum	20.21
Median	15.20
Mean	14.71
Variance	33.13
Std. Dev.	5.76
Quartiles
0.25	8.73
0.50	15.20
0.75	20.21

1-T
n =	3
Minimum	5.84
Maximum	8.20
Median	7.20
Mean	7.08
Variance	1.40
Std. Dev.	1.18
Quartiles
0.25	5.84
0.50	7.20
0.75	8.20

165-C
n =	3
Minimum	23.03
Maximum	39.23
Median	32.11
Mean	31.46
Variance	65.93
Std. Dev.	8.12
Quartiles
0.25	23.03
0.50	32.11
0.75	39.23

165-T
n =	3
Minimum	18.35
Maximum	45.97
Median	26.32
Mean	30.21
Variance	202.08
Std. Dev.	14.22
Quartiles
0.25	18.35
0.50	26.32
0.75	45.97

167-C
n =	3
Minimum	24.32
Maximum	29.66
Median	28.87
Mean	27.62
Variance	8.31
Std. Dev.	2.88
Quartiles
0.25	24.32
0.50	28.87
0.75	29.66

167-T
n =	3
Minimum	17.51
Maximum	35.34
Median	33.05
Mean	28.63
Variance	94.11
Std. Dev.	9.70
Quartiles
0.25	17.51
0.50	33.05
0.75	35.34

Class

Gene

Protein name

Organism

Genbank ID

UniProt ID

Amino acid composition table

GT43

POPTR_0016s08770 (EnsemblPlants link)

glycosyltransferase GT43B (GT43B )

Populus trichocarpa

AEG25424.1 (NCBI query)

B9IJ10(UniProtKB link)

Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

Normalized RNA-seq library counts for POPTR_0016s08770

glycosyltransferase GT43B (GT43B )

WT-C
n =	3
Minimum	6.10
Maximum	9.57
Median	6.11
Mean	7.26
Variance	4.00
Std. Dev.	2.00
Quartiles
0.25	6.10
0.50	6.11
0.75	9.57

WT-T
n =	3
Minimum	2.29
Maximum	7.14
Median	6.02
Mean	5.15
Variance	6.45
Std. Dev.	2.54
Quartiles
0.25	2.29
0.50	6.02
0.75	7.14

1-C
n =	3
Minimum	3.80
Maximum	18.03
Median	11.06
Mean	10.96
Variance	50.63
Std. Dev.	7.12
Quartiles
0.25	3.80
0.50	11.06
0.75	18.03

1-T
n =	3
Minimum	5.03
Maximum	5.98
Median	5.53
Mean	5.51
Variance	0.23
Std. Dev.	0.48
Quartiles
0.25	5.03
0.50	5.53
0.75	5.98

165-C
n =	3
Minimum	15.63
Maximum	37.97
Median	20.69
Mean	24.76
Variance	137.21
Std. Dev.	11.71
Quartiles
0.25	15.63
0.50	20.69
0.75	37.97

165-T
n =	3
Minimum	13.60
Maximum	24.25
Median	18.25
Mean	18.70
Variance	28.51
Std. Dev.	5.34
Quartiles
0.25	13.60
0.50	18.25
0.75	24.25

167-C
n =	3
Minimum	11.78
Maximum	23.00
Median	14.01
Mean	16.26
Variance	35.28
Std. Dev.	5.94
Quartiles
0.25	11.78
0.50	14.01
0.75	23.00

167-T
n =	3
Minimum	10.28
Maximum	21.94
Median	19.31
Mean	17.18
Variance	37.40
Std. Dev.	6.12
Quartiles
0.25	10.28
0.50	19.31
0.75	21.94

Class

Gene

Protein name

Organism

Genbank ID

UniProt ID

Amino acid composition table

GT43

POPTR_0007s10660 (EnsemblPlants link)

glycosyltransferase GT43C (GT43C)

Populus trichocarpa

AEG25425.1 (NCBI query)

B9HH87(UniProtKB link)

Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

Normalized RNA-seq library counts for POPTR_0007s10660

glycosyltransferase GT43C (GT43C)

WT-C
n =	3
Minimum	8.60
Maximum	18.09
Median	16.30
Mean	14.33
Variance	25.43
Std. Dev.	5.04
Quartiles
0.25	8.60
0.50	16.30
0.75	18.09

WT-T
n =	3
Minimum	6.60
Maximum	16.41
Median	14.03
Mean	12.35
Variance	26.18
Std. Dev.	5.12
Quartiles
0.25	6.60
0.50	14.03
0.75	16.41

1-C
n =	3
Minimum	6.34
Maximum	21.64
Median	13.47
Mean	13.82
Variance	58.61
Std. Dev.	7.66
Quartiles
0.25	6.34
0.50	13.47
0.75	21.64

1-T
n =	3
Minimum	6.09
Maximum	12.44
Median	8.54
Mean	9.02
Variance	10.26
Std. Dev.	3.20
Quartiles
0.25	6.09
0.50	8.54
0.75	12.44

165-C
n =	3
Minimum	9.71
Maximum	14.76
Median	12.14
Mean	12.20
Variance	6.38
Std. Dev.	2.53
Quartiles
0.25	9.71
0.50	12.14
0.75	14.76

165-T
n =	3
Minimum	4.66
Maximum	25.51
Median	17.07
Mean	15.75
Variance	109.99
Std. Dev.	10.49
Quartiles
0.25	4.66
0.50	17.07
0.75	25.51

167-C
n =	3
Minimum	11.87
Maximum	21.86
Median	17.11
Mean	16.95
Variance	24.97
Std. Dev.	5.00
Quartiles
0.25	11.87
0.50	17.11
0.75	21.86

167-T
n =	3
Minimum	13.04
Maximum	21.66
Median	13.22
Mean	15.97
Variance	24.26
Std. Dev.	4.93
Quartiles
0.25	13.04
0.50	13.22
0.75	21.66

Class

Gene

Protein name

Organism

Genbank ID

UniProt ID

Amino acid composition table

GT43

POPTR_0005s18500 (EnsemblPlants link)

glycosyltransferase GT43D (GT43D)

Populus trichocarpa

AEG25426.1 (NCBI query)

F6M1G6(UniProtKB link)

Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

Normalized RNA-seq library counts for POPTR_0005s18500

glycosyltransferase GT43D (GT43D)

WT-C
n =	3
Minimum	3.47
Maximum	3.69
Median	3.60
Mean	3.59
Variance	0.01
Std. Dev.	0.11
Quartiles
0.25	3.47
0.50	3.60
0.75	3.69

WT-T
n =	3
Minimum	3.86
Maximum	5.41
Median	5.22
Mean	4.83
Variance	0.71
Std. Dev.	0.85
Quartiles
0.25	3.86
0.50	5.22
0.75	5.41

1-C
n =	3
Minimum	5.56
Maximum	10.68
Median	5.56
Mean	7.27
Variance	8.74
Std. Dev.	2.96
Quartiles
0.25	5.56
0.50	5.56
0.75	10.68

1-T
n =	3
Minimum	3.93
Maximum	5.31
Median	4.70
Mean	4.65
Variance	0.48
Std. Dev.	0.69
Quartiles
0.25	3.93
0.50	4.70
0.75	5.31

165-C
n =	3
Minimum	3.28
Maximum	8.23
Median	4.23
Mean	5.25
Variance	6.90
Std. Dev.	2.63
Quartiles
0.25	3.28
0.50	4.23
0.75	8.23

165-T
n =	3
Minimum	6.38
Maximum	11.46
Median	9.16
Mean	9.00
Variance	6.47
Std. Dev.	2.54
Quartiles
0.25	6.38
0.50	9.16
0.75	11.46

167-C
n =	3
Minimum	3.71
Maximum	8.00
Median	6.29
Mean	6.00
Variance	4.66
Std. Dev.	2.16
Quartiles
0.25	3.71
0.50	6.29
0.75	8.00

167-T
n =	3
Minimum	4.49
Maximum	5.53
Median	4.95
Mean	4.99
Variance	0.27
Std. Dev.	0.52
Quartiles
0.25	4.49
0.50	4.95
0.75	5.53

Class

Gene

Protein name

Organism

Genbank ID

UniProt ID

Amino acid composition table

GT43

POPTR_0002s10790 (EnsemblPlants link)

glycosyltransferase GT43E (GT43E)

Populus trichocarpa

AEG25427.1 (NCBI query)

F6M1G7(UniProtKB link)

Amino Acid Composition(ExPASy link)
Protein sequence(FASTA)

Normalized RNA-seq library counts for POPTR_0002s10790

glycosyltransferase GT43E (GT43E)

WT-C
n =	3
Minimum	7.50
Maximum	9.48
Median	7.90
Mean	8.29
Variance	1.10
Std. Dev.	1.05
Quartiles
0.25	7.50
0.50	7.90
0.75	9.48

WT-T
n =	3
Minimum	6.03
Maximum	9.40
Median	8.01
Mean	7.81
Variance	2.87
Std. Dev.	1.69
Quartiles
0.25	6.03
0.50	8.01
0.75	9.40

1-C
n =	3
Minimum	5.71
Maximum	8.75
Median	6.07
Mean	6.84
Variance	2.76
Std. Dev.	1.66
Quartiles
0.25	5.71
0.50	6.07
0.75	8.75

1-T
n =	3
Minimum	6.37
Maximum	8.44
Median	7.99
Mean	7.60
Variance	1.19
Std. Dev.	1.09
Quartiles
0.25	6.37
0.50	7.99
0.75	8.44

165-C
n =	3
Minimum	5.65
Maximum	8.77
Median	7.36
Mean	7.26
Variance	2.44
Std. Dev.	1.56
Quartiles
0.25	5.65
0.50	7.36
0.75	8.77

165-T
n =	3
Minimum	3.61
Maximum	10.56
Median	6.52
Mean	6.90
Variance	12.18
Std. Dev.	3.49
Quartiles
0.25	3.61
0.50	6.52
0.75	10.56

167-C
n =	3
Minimum	6.64
Maximum	8.54
Median	7.30
Mean	7.49
Variance	0.93
Std. Dev.	0.96
Quartiles
0.25	6.64
0.50	7.30
0.75	8.54

167-T
n =	3
Minimum	9.42
Maximum	10.96
Median	9.71
Mean	10.03
Variance	0.67
Std. Dev.	0.82
Quartiles
0.25	9.42
0.50	9.71
0.75	10.96

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